scAnalyzer Studio

Quality Control

Min Genes & Max Genes

Max Mito % & Min Cells

Run Scrublet

Normalization Cell Cycle Organism

WNID Imputation

k (Neighbors)

Threshold

n_pcs

Batch Correction

PCA Comps

Neighbors (K)

UMAP

t-SNE

PHATE

Clustering & Res/K

Differential Method Trajectory (Root & Branches)

Interactive HTML Plots:

Interactive UMAP 3D Interactive PCA Interactive t-SNE QC Violins Marker Heatmap